/**
 * @file src/MotifTreeFixedLength.h
 *
 * @date 30-jun-2013
 *
 * @author Youri Hoogstrate
 *
 * @section LICENSE
 * yh-kt-fold can predict RNA 2D structures including K-turns.
 * Copyright (C) 2012-2013 Youri Hoogstrate
 *
 * This file is part of yh-kt-fold.
 *
 * yh-kt-fold is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * yh-kt-fold is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program. If not, see <http://www.gnu.org/licenses/>.
 */



#include "main.h"
#include "Functions/library.h"



/**
 * @brief Stores and provides access to (K-Turn) motif objects and provides extended trace-back routes for such motifs.
 *
 * @section DESCRIPTION
 * Stores all (K-turn) motifs in memory.
 *
 * @note Replaces the "KTurnMotif.cpp" and "TracebackMotif.cpp".
 *
 * @date 30-jun-2013
 */
class MotifTreeFixedLength
{
	private:
		MotifTreeFixedLengthFixedSize *root;
		MotifTreeFixedLength();
		
	public:
	
		void add(KTurnMotif *kturnmotif);
		Motif *search(char *motif5p, char *motif3p);
};
